PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00179.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 332aa    MW: 36886.4 Da    PI: 9.4234
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00179.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.9e-104888545
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                             k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Rsa1.0_00179.1_g00020.1 48 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 88
                             7789************************9877777766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-84191No hitNo description
SMARTSM003385.7E-744107IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384690IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-74891No hitNo description
PfamPF001706.6E-74888IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141441.4E-34130205IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADTSSRTDA STDGDTDPRD MGSERGQGMQ LAAASDSSGR SKDKLDQKTV RRLAQNREAA  60
RKSRLRKKAY VQQLENSRLK LTQLEQELQR ARQQGVFISS SGDQAHSTGG NGALAFDAEH  120
SRWLEEKNKQ MNELRSALNA HAGDAELRII VDGVMSHYEE LFRIKSNAAK NDVFHLLSGM  180
WKTPAERCFL WLGGFRSSEL LKLLANQLEP MTERQVMGIN SLQQTSQQAE DALSQGMESL  240
QQSLADTLSS GTLGSSSSDN VASYMGQMAM AMGQLGTLEG FIRQADNLRL QTLQQMIRVL  300
TTRQSARAFL AIHDYSSRLR ALSSLWLARP RE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731743.10.0PREDICTED: transcription factor TGA6-like isoform X1
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A078CAK80.0A0A078CAK8_BRANA; BnaA03g32170D protein
TrEMBLM4CB630.0M4CB63_BRARP; Uncharacterized protein
STRINGBra001443.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.20.0TGACG motif-binding factor 6